Scale Biosciences, Inc. v. Parse Biosciences, Inc.

CourtDistrict Court, D. Delaware
DecidedOctober 8, 2025
Docket1:22-cv-01597
StatusUnknown

This text of Scale Biosciences, Inc. v. Parse Biosciences, Inc. (Scale Biosciences, Inc. v. Parse Biosciences, Inc.) is published on Counsel Stack Legal Research, covering District Court, D. Delaware primary law. Counsel Stack provides free access to over 12 million legal documents including statutes, case law, regulations, and constitutions.

Bluebook
Scale Biosciences, Inc. v. Parse Biosciences, Inc., (D. Del. 2025).

Opinion

IN THE UNITED STATES DISTRICT COURT FOR THE DISTRICT OF DELAWARE

SCALE BIOSCIENCES, INC. and ) ROCHE SEQUENCING SOLUTIONS, ) INC., ) ) Plaintiffs, ) ) v. ) Civil Action No. 22-1597-CJB ) PARSE BIOSCIENCES, INC., ) ) Defendant. ) ____________________________________) PARSE BIOSCIENCES, INC. and ) UNIVERSITY OF WASHINGTON, ) ) Counterclaim-Plaintiffs, ) ) v. ) ) SCALE BIOSCIENCES, INC., ) ) Counterclaim-Defendant. ) )

Kelly E. Farnan and Sara M. Metzler, RICHARDS, LAYTON & FINGER, PA, Wilmington, DE; Stephen Rabinowitz (argued), WOLF, GREENFIELD, & SACKS, P.C., New York, NY; Chelsea Loughran, Stuart V.C. Duncan Smith, Emma L. Frank and Arden E. Bonzo, WOLF, GREENFIELD, & SACKS, P.C., Boston, MA, Attorneys for Plaintiff and Counterclaim- Defendant Scale Biosciences, Inc.

Karen L Pascale and Robert M. Vrana, YOUNG, CONAWAY, STARGATT & TAYLOR LLP, Wilmington, DE; Byron L. Pickard (argued), R. Wilson Powers III, Chandrika Vira, Christopher M. Gallo, Brady P. Gleason, David Y. Wang, Louis P. Panzica, Jr., Ryan N. Kaiser and Cristen A. Corry, STERNE, KESSLER, GOLDSTEIN & FOX, P.L.L.C., Washington, D.C., Attorneys for Defendant and Counterclaim-Plaintiff Parse Biosciences, Inc. and Counterclaim-Plaintiff University of Washington.

MEMORANDUM OPINION

October 8, 2025 Wilmington, Delaware BURKE, United oO Ge Judge In this action filed by Plaintiff and Counterclaim-Defendant Scale Biosciences, Inc. (hereafter, “Scale” or “Plaintiff’) against Defendant and Counterclaim-Plaintiff Parse Biosciences, Inc. (hereafter, “Parse” or “Defendant”), Plaintiff alleges infringement of United States Patent Nos. 10,626,442 (the “"442 patent”), 10,982,256 (the “256 patent”), 11,512,341 (the “341 patent”), and 11,634,752 (the “"752 patent,” and collectively, the “asserted patents” or “patents-in-suit”). Presently before the Court! is Defendant’s Motion for Summary Judgment of Invalidity under 35 U.S.C. § 112(a) (“Section 112(a)”) with respect to the '752, '442, and '256 patents (collectively, the “patents at issue’), filed pursuant to Federal Rule of Civil Procedure 56 (“Motion”). (D.I. 314) In this Memorandum Opinion, the Court will address the Motion as it relates to the '752 patent. For the reasons set forth below, the Motion is GRANTED as to that patent. I. BACKGROUND A. Procedural Background Plaintiff commenced this action on December 14, 2022; its Complaint then asserted various claims for direct and indirect infringement of the '442 patent, the '256 patent, and the '341 patent. (D.I. 1)? Plaintiff filed a First Supplemental Complaint on August 30, 2023, which

1 The parties have jointly consented to the Court’s jurisdiction to conduct all proceedings in this case, including trial, the entry of final judgment, and all post-trial proceedings. (D.I. 12) 2 When Scale filed the initial Complaint in December 2022, it initially also listed Roche Sequencing Solutions, Inc. (“Roche”) as a Nominal Defendant. (D.I. 1 at § 3; D.I. 325 at 3) The initial Complaint explained that Roche is the owner of the asserted patents (albeit one that, at that time, had not yet agreed to join as a party in the action); it also noted that Scale is the exclusive licensee of those patents. (D.I. 1 at § 2-3) Subsequently, on May 3, 2023, Roche re- aligned as a Plaintiff in this case. (D.I. 53; D.I. 325 at 3) That said, because the relevant

is the operative complaint in this case; it there added claims of direct and indirect infringement of the '752 patent. (D.I. 70) With regard to the First Supplemental Complaint, on August 30, 2023, Parse filed an Answer and Parse, along with University of Washington, filed certain operative counterclaims against Scale. (D.I. 71)3

The Court held a Markman hearing on December 15, 2023. (D.I. 114) Between January 18, 2024 and September 5, 2024, the Court issued various orders regarding claim construction. (D.I. 118-19; D.I. 121; D.I. 126; D.I. 239; D.I. 241) Defendant filed the instant Motion on February 24, 2025—the same date that the parties each filed various other summary judgment and Daubert motions. (D.I. 314) The Motion was fully briefed as of April 17, 2025. (D.I. 395) The Court heard oral argument on the portion of the Motion discussed herein on June 12, 2025. (D.I. 419 (hereinafter, “Tr.”)) B. Factual Background At present, Plaintiff is asserting infringement of claim 11 of the '442 patent, claims 1-2, 6-11, and 14 of the '752 patent, claims 1-2 and 5-6 of the '256 patent, and claim 13 of the '341

patent (collectively, the “asserted claims,” and without claim 13 of the '341 patent, the “claims at issue”). (D.I. 325 at 1; D.I. 329, ex. 32; D.I. 439) The three patents at issue, which share a common specification, (D.I. 325 at 4), are generally directed to “methods, compositions, kits and devices for the detection of target molecules” in a sample of cells. (See, e.g., '256 patent,

answering brief here was filed solely by Scale, (see, e.g., D.I. 366), because the Motion only relates to claims brought by Plaintiffs against Parse, and for ease of reference, herein when the Court refers to the non-movant, it has and will simply refer to “Scale” by name or as “Plaintiff.”

3 As a result, Parse and the University of Washington are Counterclaim-Plaintiffs in this case as well. That said, because the instant Motion only relates to claims brought against Parse, herein when the Court refers to the movant, it will simply refer to “Parse” by name or as “Defendant.” Abstract)4 The inventions described therein are said to address the need for “accurate and sensitive detection, identification and quantification of target molecules in every cell of a complex population to retain specific information regarding that target molecule.” (Id., col. 1:44-48)

Plaintiff asserts that Defendant infringes each of the asserted claims by making, selling, offering for sale, and using what at least Plaintiff describes as 19 different kits (and 19 other add- on products and services) for labeling target molecules within cells (the “accused products” or “accused kits”). (D.I. 307 at 3; see also D.I. 70 at ¶¶ 15-26, 34-156; but see D.I. 326, ex. 12 at ¶ 36, 38-40) The accused kits may be used to perform split pool combinatorial barcoding of a whole transcriptome. (D.I. 328, ex. 10 at ¶ 109; D.I. 326, ex. 12 at ¶ 338) Transcriptome sequencing allows researchers to analyze the mRNA, among other target molecules, within the cell, (D.I. 326, ex. 12 at ¶¶ 38, 337-38), and such a process is facilitated by labeling target molecules with barcodes, as described in the methods claimed in the asserted patents, (id. at ¶¶ 20-22).

Certain aspects of the Motion relate to the claim term “unique binding agent” (“UBA”). The Court previously construed “UBA” as used in the asserted patents to mean “a molecule or assembly that is designed to bind with at least one target molecule, at least one target molecule surrogate, or both[.]” (D.I. 118; see also '442 patent, col. 17:18-20)5 Per the shared patent

4 The asserted patents are found in various places on the docket, including at D.I. 328, Exhibits 1-4. Hereafter, the Court will cite to these patents simply by their number.

5 Relatedly, the Court construed the term “target molecules” as used in the patents at issue to mean “molecules of interest . . . that are being detected or quantified.” (D.I. 119; see also id. (noting both parties agreed that the term has this meaning, but that a remaining possibly disputed issue was whether target molecules are ones with a “known individual identity”) (citing D.I. 114 at 93, 106-07)) specifications, a UBA can be, inter alia, an aptamer or an antibody.

Free access — add to your briefcase to read the full text and ask questions with AI

Related

Ariad Pharmaceuticals, Inc. v. Eli Lilly and Co.
598 F.3d 1336 (Federal Circuit, 2010)
Continental Paper Bag Co. v. Eastern Paper Bag Co.
210 U.S. 405 (Supreme Court, 1908)
Colorado v. New Mexico
467 U.S. 310 (Supreme Court, 1984)
Anderson v. Liberty Lobby, Inc.
477 U.S. 242 (Supreme Court, 1986)
KSR International Co. v. Teleflex Inc.
550 U.S. 398 (Supreme Court, 2007)
Exergen Corp. v. Wal-Mart Stores, Inc.
575 F.3d 1312 (Federal Circuit, 2009)
Procter & Gamble Co. v. Teva Pharmaceuticals USA, Inc.
566 F.3d 989 (Federal Circuit, 2009)
Computer Docking Station Corp. v. Dell, Inc.
519 F.3d 1366 (Federal Circuit, 2008)
Microsoft Corp. v. i4i Ltd. Partnership
131 S. Ct. 2238 (Supreme Court, 2011)
HTC CORP. v. IPCom GmbH & Co., KG
667 F.3d 1270 (Federal Circuit, 2012)
Genentech, Inc. v. Chiron Corporation
112 F.3d 495 (Federal Circuit, 1997)
Enzo Biochem, Inc. v. Calgene, Inc., Defendant-Cross
188 F.3d 1362 (Federal Circuit, 1999)

Cite This Page — Counsel Stack

Bluebook (online)
Scale Biosciences, Inc. v. Parse Biosciences, Inc., Counsel Stack Legal Research, https://law.counselstack.com/opinion/scale-biosciences-inc-v-parse-biosciences-inc-ded-2025.