In Re THERIPION, INC.

Court of Appeals for the Federal Circuit·Decided August 10, 2023·No. 22-1346·Unpublished

Opinion

NOTE: This disposition is nonprecedential.

United States Court of Appeals for the Federal Circuit

IN RE: THERIPION, INC.,

Appellant

2022-1346

Appeal from the United States Patent and Trademark Office, Patent Trial and Appeal Board in No. 15/909,314.

Decided: August 10, 2023

JILL BROWNING, Greenblum & Bernstein, P.L.C., Reston, VA, argued for appellant. Also represented by NICHOLAS V. SHERBINA, Sherbina Intellectual Property Law, PLLC, Everett, WA.

MARY L. KELLY, Office of the Solicitor, United States Patent and Trademark Office, Alexandria, VA, argued for appellee Katherine K. Vidal. Also represented by THOMAS W. KRAUSE, ROBERT MCBRIDE, AMY J. NELSON, FARHEENA YASMEEN RASHEED.

Before HUGHES, CUNNINGHAM, and STARK, Circuit Judges.

STARK, Circuit Judge.

2 IN RE: THERIPION, INC.

Theripion, Inc. (“Theripion”) appeals the results of the Patent Trial and Appeal Board’s (“Board”) ex parte examination of U.S. Patent Application No. 15/909,314 (the “’314 application”). The Board affirmed a patent examiner’s final rejection of claims 1-13, 16, 22-24, and 27 of the ’314 application as obvious over numerous prior-art references. For the following reasons, we vacate and remand. On remand , the Board must reassess its affirmance of the examiner ’s rejection of the claims and must provide further explanation of its reasoning for whatever conclusions it reaches.

I

Low levels of high-density lipoprotein (“HDL”) have long been associated with an increased risk of myocardial infarction. (J.A. 23) (Specification ¶ 4) Along with stroke, myocardial infarction is often a consequence of cardiovascular disease, and these two conditions share “a common underlying etiology of atherosclerosis.” 1 (J.A. 23) (Specification ¶ 3) Therefore, therapeutic strategies developed to promote atheroprotection – that is, protecting patients from cardiovascular disease and, thereby, reducing the risk of stroke and myocardial infarction – have focused on increasing a patient’s HDL levels. (J.A. 1416 (“It is hypothesized that high levels of plasma HDL are not only protective against coronary artery disease, but may actually induce regression of atherosclerotic plaques.”); J.A. 2902 (“HDL infusion therapies may induce both acute and chronic mechanisms that mediate atheroprotection.”))

Apolipoprotein A-1 (“ApoA1”) is “the principal protein component of HDL.” (J.A. 24) (Specification ¶ 5) Introducing ApoA1 into the body can, thus, be a mechanism for increasing HDL levels. (J.A. 24) (Specification ¶¶ 6-7)

1 Atherosclerosis is the “thickening or hardening of the arteries caused by plaque buildup.” Appellant’s Br. 3.

IN RE: THERIPION, INC. 3

However, ApoA1 has a relatively short half-life, meaning it only remains intact in the human body for a short time. (J.A. 75 (Specification ¶ 169) (discussing “circulating half- life of the resulting molecule”); J.A. 1418 (“ApoA-I molecules of the invention may retain all or most of their biological activities and the following properties may result: altered pharmacokinetics and pharmacodynamics leading to increased half-life and alterations in tissue distribution (e.g[.], ability to stay in the vasculature for longer periods of time) . . . .”) (emphasis added)) The half-life of ApoA1 can be improved by joining it to another protein, forming what is referred to in the art as a fusion protein. (J.A. 6) (“[I]t was known that the Fc portion in the fusion protein increases the plasma half-life of the fused ApoA-1.”) ApoA1 can be connected to another protein either directly or by using a linker molecule, creating an ApoA1 fusion protein. (J.A. 25) (Specification ¶ 10)

Immunoglobulins, a different kind of protein than ApoA1 (J.A. 43) (Specification ¶ 76), have remarkably long half-lives. (J.A. 602) (“The half-life of [a certain class of immunoglobulins] in circulation is the longest among all five types of immunoglobulin and may reach 21 days.”) Portions of immunoglobulins that “bind[] to antibody receptors on cells” are referred to as “Fc regions” or “Fc fragments .” (J.A. 43-44) (Specification ¶ 78) Prior to the ’314 application, it was known in the art that fusion proteins could achieve longer half-lives when one protein was an Fc fragment of an immunoglobulin. (J.A. 2182) (“Fusion proteins comprising an Fc portion of an immunoglobulin can bestow several desirable properties on a fusion protein including . . . increased serum half-life . . . .”) At the time the ’314 application was filed, there was already a commercially available fusion protein, the Sino Biological ApoA1- Fc fusion protein, which contained ApoA1 directly bound (i.e., without a linker) to an Fc region of an immunoglobulin . (J.A. 105) (Specification ¶ 248)

4 IN RE: THERIPION, INC.

Raising HDL levels does not, by itself, provide sufficient atheroprotection. (J.A. 23 (Specification ¶ 4) (referring to “consensus view that the process of reverse cholesterol transport [i.e., RCT] . . . is central to beneficial HDL activity rather than simply an increase in HDL without RCT”); J.A. 2904 (“[C]holesterol efflux relates to atherosclerotic severity to a greater degree than HDL cholesterol concentration.”)) Scientists have come to understand that RCT, the process by which the human body removes free cholesterol, is also important for atheroprotection – and, further, that RCT is mediated by ApoA1 and HDL. (J.A. 2904) (“The removal of free cholesterol . . . within atherosclerotic plaques by HDL and [ApoA1] is thought to be pivotal to atheroprotection.”) The first, and critical, step in RCT is cholesterol efflux. (Id.)

Theripion observed that the Sino Biological ApoAl-Fc fusion protein, wherein ApoA1 and the Fc fragment are directly bound to each other without a linker, exhibits disappointing cholesterol efflux activity relative to ApoA1-Fc fusion proteins having linkers consisting of a large number of amino acids. (J.A. 49) (Specification ¶ 95) As the specification of the ’314 application states:

ApoA-1-Fc fusion protein containing a 26 amino acid linker between ApoA-1 and the Fc region (ApoA-1(26)Fc) demonstrated increased cholesterol efflux as compared to either an ApoA-1-Fc fusion protein with a two amino acid linker (ApoA-1(2)Fc (Theripion)) or an ApoA-1-Fc fusion protein without a linker (ApoA-1(0)Fc ([Sino Biological ApoA1- Fc fusion protein])) and had activity similar to wild-type human ApoA-1 (Control ApoA-1).”)

(Id.) Theripion discovered that using a linker composed of 10 to 40 amino acids between ApoA1 and the Fc region increases cholesterol efflux activity. (Id.) The claims of the ’314 application purport to cover this alleged invention.

IN RE: THERIPION, INC. 5

Independent claim 1, which is illustrative of the issues presented in this appeal, reads:

1. A fusion polypeptide comprising, from an amino-terminal position to a carboxyl-terminal position, ApoA1-L1-D, wherein:

ApoA1 is a first polypeptide segment comprising an amino acid sequence having at least 95% identity with amino acid residues 19-267 or 25-267 of SEQ ID NO:2, wherein said first polypeptide segment has cholesterol efflux activity; L1 is a first polypeptide linker consisting of from 10 to 40 amino acid residues; and D is an immunoglobulin Fc region, wherein the fusion polypeptide has increased cholesterol efflux activity as compared to the ApoA1-L1-D fusion polypeptide in which L1 is a two amino acid linker or is absent.

(J.A. 17) Claims 2-13, 16, 22-24, and 27 depend from claim 1. (J.A. 17-19)

In a January 24, 2020 office action, an examiner with the Patent and Trademark Office (“PTO”) rejected claims 1-13 and 27 as obvious in view of a combination of 6 IN RE: THERIPION, INC.

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