Genentech, Inc. v. Amgen, Inc.

289 F.3d 761, 62 U.S.P.Q. 2d (BNA) 1640, 2002 U.S. App. LEXIS 8065, 2002 WL 833862
CourtCourt of Appeals for the Federal Circuit
DecidedApril 29, 2002
Docket01-1098
StatusPublished
Cited by54 cases

This text of 289 F.3d 761 (Genentech, Inc. v. Amgen, Inc.) is published on Counsel Stack Legal Research, covering Court of Appeals for the Federal Circuit primary law. Counsel Stack provides free access to over 12 million legal documents including statutes, case law, regulations, and constitutions.

Bluebook
Genentech, Inc. v. Amgen, Inc., 289 F.3d 761, 62 U.S.P.Q. 2d (BNA) 1640, 2002 U.S. App. LEXIS 8065, 2002 WL 833862 (Fed. Cir. 2002).

Opinion

RADER, Circuit Judge.

On summary judgment, the U.S. District Court for the Northern District of California determined that Amgen, Inc. (Amgen) did not literally infringe Genentech, Inc.’s (Genentech’s) U.S. Patent Nos. 4,704,362 (the '362 patent), 5,221,619 (the '619 patent), and 5,583,013 (the '013 patent). Gen-entech, Inc. v. Amgen, Inc., No. C 96-03752 WHA, slip op. at 1-2 (N.D.Cal. Oct. 12, 2000) (Amended Summary Judgment Order). The district court also barred Genentech from proceeding on a theory of infringement under the doctrine of equivalents. Id. Because the district court did not abuse its discretion, this court affirms the district court’s decision to preclude Genentech from asserting infringement under the doctrine of equivalents. The district court, however, relied on an erroneous claim construction in granting Am-gen’s motion for summary judgment. Accordingly, this court vacates and remands for a determination of infringement under this court’s revised claim construction.

I.

Genentech owns the '362, '619 and '013 patents. These patents claim methods and cloning vehicles for the introduction and expression of genetic information, i.e., de-oxyribonucleic acid (DNA) or genes, in unicellular organisms that do not naturally contain or express that genetic information. The patents thus enable introduction of a DNA sequence, such as a synthetic gene that expresses a usable protein, into cells via a cloning vehicle. The cells then express this sequence through the endogenous protein-making machinery of the cell. The inventions thus enable harvesting *765 valuable proteins from single cell “factories.”

Inside a bacterial cell, the expression of a gene into a protein involves a two-step process. First, the cell transcribes the DNA sequence into messenger ribonucleic acid (mRNA) by an enzyme called RNA polymerase. The RNA polymerase then binds to a specific sequence within the DNA known as a “promoter” upstream from the DNA sequence encoding the usable protein. To control transcription, and therefore protein expression, the DNA sequence upstream from the usable gene also contains a site called an “operator.” The operator controls transcription by binding a protein known as a “repressor.” When the repressor binds to the operator, the repressor prevents the RNA polymerase from binding to the promoter, and therefore blocks transcription.

After transcribing a DNA sequence into mRNA, the cell engages in the second step, translation of the mRNA into protein. Specifically, a ribosome, which is a cellular structure involved in converting mRNA to polypeptides, binds to an upstream portion of the mRNA sequence known as the “ribosome binding site.” This binding triggers translation of the mRNA into a linear chain of amino acids— a protein.

The three patents at issue, which contain nearly identical specifications, describe the use of a recombinant cloning vehicle (e.g., a plasmid, comprising a circular piece of non-chromosomal double-stranded DNA) to transform a unicellular organism host such as the bacterium E. coli to enable that organism to make large amounts of a protein that it would not otherwise produce. The first claim in all three patents sets forth the invention:

’362 claim 1:
A recombinant DNA cloning vehicle suited for transformation of a microbial host comprising
(a) a homologous control region which regulates expression of a structural gene and
(b) a DNA insert comprising ... in that the DNA insert is ... and the host transformed thereby is capable of expressing ... under the control of the said control region and in recoverable form.
’619 claim 1:
A process for the production of a polypeptide comprising a preselected functional mammalian polypeptide or polypeptide intermediate therefor in a microbial cell culture, said process comprising
I. effecting expression of said polypeptide in a microorganism transformed with a replicable cloning vehicle comprising DNA encoding said polypeptide which DNA is under the control of an expression control region homologous to said microorganism; and
(ii) recovering the polypeptide from said cell culture.
’013 claim 1:
A process for the production of a polypeptide comprising ... effecting expression of said polypeptide in a microorganism transformed with a replicable cloning vehicle comprising DNA encoding said polypeptide which DNA is under the operative control of an expression control region functional in E. coli comprising operatively linked promoter, operator and ribosome binding site DNA.

(Emphasis added.)

In its 17 May 1999 claim construction order, the district court (Judge Smith) construed the relevant terms in the claims. Genentech, Inc. v. Amgen, Inc., No. C96- *766 3752 FMS, slip op. at 1 (N.D.Cal. May 17, 1999) (Order). The district court determined that the “control region,” which regulates gene expression, contains at least three control elements: a promoter, an operator, and a ribosome binding site. Id. at 24. As construed by the district court, the “control region” in all three patents must be taken from a single “operon” (i.e., DNA comprising a control region and the gene whose expression is regulated by that control region). 1 Id. at 20-23. Variation from the native control region of the untransformed host is permissible as long as the control region remains operable, i.e., the control region need not be intact. Id. at 20.

The court construed “homologous” in the '362 and '619 patents to mean that the control region DNA sequence is taken from, and ordinarily is endogenous to, the host DNA in its untransformed state. Id. at 12. To be endogenous to the host, DNA must be either part of the chromosomal host DNA, part of the plasmid DNA native to the host, or part of the chromosomal or plasmid DNA native to a “bacteriophage” (i.e., a bacterial virus from which one may derive a plasmid) ordinarily found in the bacterial host cell. Id. A control region is not homologous if it includes any alterations in the endogenous sequence, with the single exception of a promoter mutation described in the patent, namely, deletion of the catabolite activator protein (CAP) binding site. Id. at 10-12; '362 patent, col. 2,11. 31-35. 2

The district court construed the term “functional in E. coli” to mean that the control region performs in E. coli. Although operative in E. coli, the term does not mean that the control region must be homologous to E. coli. Id. at 15. The district court also interpreted the term “operatively linked” to mean that the promoter, operator, and ribosome binding site (P, O, and RBS) are sufficiently connected to direct and regulate expression.

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289 F.3d 761, 62 U.S.P.Q. 2d (BNA) 1640, 2002 U.S. App. LEXIS 8065, 2002 WL 833862, Counsel Stack Legal Research, https://law.counselstack.com/opinion/genentech-inc-v-amgen-inc-cafc-2002.