Arjun SINGH, Appellant, v. Anthony J. BRAKE, Appellee

222 F.3d 1362, 55 U.S.P.Q. 2d (BNA) 1673, 2000 U.S. App. LEXIS 18745, 2000 WL 1092325
CourtCourt of Appeals for the Federal Circuit
DecidedAugust 4, 2000
Docket99-1259
StatusPublished
Cited by32 cases

This text of 222 F.3d 1362 (Arjun SINGH, Appellant, v. Anthony J. BRAKE, Appellee) is published on Counsel Stack Legal Research, covering Court of Appeals for the Federal Circuit primary law. Counsel Stack provides free access to over 12 million legal documents including statutes, case law, regulations, and constitutions.

Bluebook
Arjun SINGH, Appellant, v. Anthony J. BRAKE, Appellee, 222 F.3d 1362, 55 U.S.P.Q. 2d (BNA) 1673, 2000 U.S. App. LEXIS 18745, 2000 WL 1092325 (Fed. Cir. 2000).

Opinions

Opinion for the court filed by Circuit Judge LOURIE. Opinion concurring in the judgment filed by Circuit Judge GAJARSA.

LOURIE, Circuit Judge.

Arjun Singh appeals from the judgment of the United States Patent and Trademark Office Board of Patent Appeals and Interferences awarding priority of invention to Anthony J. Brake. See Singh v. Brake, Paper No. 164 (BPAI May 11, 1998). Because certain of the Board’s key findings underlying its conclusion that Singh failed to prove conception of the subject matter of the interference prior to the effective filing date of Brake were unsupported by substantial evidence, we vacate and remand. Because the Board did not address whether Brake’s earliest application adequately described and enabled the disputed subject matter as required by 35 U.S.C. § 112, ¶ 1, we remand for determination of those issues as well.

BACKGROUND

Singh and Brake are parties to an interference consisting of a count corresponding to all thirty-seven claims of Brake’s U.S. Patent 4,870,008 (hereinafter “Brake 2”), entitled “Secretory Expression in Eu-karyotes,” and claims 8 and 19-21 of Singh’s application Ser. No. 07/552,719, entitled “Use of Alpha Factor Sequences in Yeast Expression Systems.” The count, which is identical to claim 1 of Brake 2, reads as follows:

1. A DNA construct comprising a sequence of the following formula:

5’ — L—S—Gene * — 3’,
where:
L encodes a Saccharomyces alpha-factor leader sequence recognized by a yeast host for secretion;
S encodes a spacer sequence providing processing signals resulting in the enzymatic processing by said yeast host of a precursor polypeptide encoded by L— S — Gene * into the polypeptide encoded by Gene *, S containing the sequence 5’ — Rx—R2—3’ immediately adjacent to the sequence Gene *, Rj being a codon for lysine or arginine, R2 being [a] codon [1364]*1364for arginine, with the proviso that S not contain the sequence 5’ — R3—R4—X—3’, where R3 = R1( R4 = R2, and X encodes a processing signal for dipeptidylamino-peptidaseA; and
Gene * encodes a polypeptide foreign to Saccharomyces.

Paper No. 164 at 2-3.

As indicated by the count, the claimed DNA construct is comprised of three basic components: (1) DNA encoding an alpha-factor “leader sequence” (L) that directs a yeast cell to export the protein attached to it;1 (2) a spacer (S) containing a first codon2 R1; that encodes lysine or arginine, followed by a second codon R2, that encodes arginine; and (3) a gene (Gene *) that is foreign to yeast, that encodes a protein of interest. See ’008 patent, col. 2, 11. 11-16, 38^13. The claimed DNA construct is illustrated in the figure below, with shorthand abbreviations of the three components depicted above the three-box diagram:

[[Image here]]

After the DNA construct has been introduced into the yeast cell, e.g., via a plasmid vector, the cell translates the construct, yielding nascent protein (“protein construct”). The sequence of the protein construct, like the DNA encoding it, is divided into three regions: the 83-amino acid sequence of the alpha-factor leader, the Lysine-Arginine or Arginine-Arginine two-amino acid spacer, and the amino acid sequence of the protein of interest (“gene product”).

The leader sequence functions to target the protein construct for secretion from the yeast cell. During secretion, the yeast enzyme KEX-2 recognizes the Lysine-Ar-ginine or Arginine-Arginine spacer sequence in the protein construct and cleaves it at the junction between the spacer and the gene product. As a result, the desired gene product is released into the extracellular medium, free of the leader and spacer portions of the protein construct. See Paper No. 164 at 2. Because the yeast cell exports rather than retains the desired protein, protein purification is considerably simplified. See id.

In the course of Singh’s attempts to design the claimed DNA construct in August 1982, he prepared plasmid p57, a circular DNA molecule containing the alpha-factor leader sequence and a spacer sequence directly adjacent to it.3 See Singh Decl. ¶ 21. During that same month, Singh incorporated the gene for human protein interferon D (“IFN-D”) into p57, thereby yielding plasmid p58. See id. In p58, the gene was also positioned adjacent to the spacer sequence, such that the leader, spacer, and gene [1365]*1365sequences were all oriented in a fashion identical to the claimed construct. From September 6 to 11, 1982, Singh’s assistant, Dr. June Lugovoy, isolated the DNA segment from p58 containing the alpha-factor leader, spacer, and IFN-D sequence, and inserted that segment (hereinafter “the p60 DNA construct”) into yeast plasmid YEp9PT (“p60”). See id. ¶26. Plasmid p60 was then introduced into yeast cells to determine whether the p60 DNA construct would generate IFN-D. See id. ¶ 27.

On October 1, 1982, protein sequencing chemist Bill Kohr informed Singh that the IFN-D expressed by yeast cells transformed with p60 contained eight additional amino acids not normally present in natural IFN-D. See id. ¶33. On approximately that same date, Singh alleges that he conceived the claimed DNA construct, i.e., he devised a plan to redesign the p60 DNA construct in order to obtain the desired gene product, IFN-D, free of those additional amino acids. See id. ¶ 34. Specifically, Singh claims that he realized that he would need to remove eight unwanted codons (twenty-four nucleotides) from the p60 DNA construct, and that he planned to accomplish this deletion by use of a technique known as “loop deletion mutagenes-is.” 4

On November 24, 1982, Singh wrote a laboratory notebook entry setting forth the undesired eight codons in the p60 DNA construct, as well as the twelve nucleotides on either side of that eight codon segment (the “flanking sequences”). See J.A. at 1380; Singh Deck ¶ 45. On that date, Singh also ordered a linear, 24-nucleotide sequence (a “24-mer”) that comprised the nucleotides of the flanking sequences. This order was canceled on the same day, and a notation in Singh’s laboratory notebook stated that Singh would perform the deletion experiment in a different way “without changing codons.” Id. On December 1, 1982, Singh ordered another 24-mer for the deletion experiment. This 24-mer was precisely complementary to the flanking sequences set forth in the November 24 entry. See J.A. at 1398; Singh Decl. ¶ 47. DNA chemist Peter Ng testified that he synthesized the 24-mer for Singh on December 20, 1982. See Ng Deck ¶ 11; Ng Dep. at 36. Singh affixed the order into his notebook on December 21, 1982, with a notation “oligonucleotide for making in-frame deletion of pro-IFN-D junction.” J.A. at 1398. Singh alleges that these facts corroborate his testimony that he conceived the claimed DNA construct before January 12, 1983, the filing date of Brake’s application Ser. No. 06/457,325 (hereinafter “Brake l”).5

Based on their mutual claims to the DNA construct, an interference was declared between Singh and Brake.

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222 F.3d 1362, 55 U.S.P.Q. 2d (BNA) 1673, 2000 U.S. App. LEXIS 18745, 2000 WL 1092325, Counsel Stack Legal Research, https://law.counselstack.com/opinion/arjun-singh-appellant-v-anthony-j-brake-appellee-cafc-2000.