Natural Resources Defense Council v. Bernhardt

District Court, E.D. California·Decided January 22, 2020·No. 1:05-cv-01207-LJO-EPG·Unknown

Opinion

UNITED STATES DISTRICT COURT

FOR THE EASTERN DISTRICT OF CALIFORNIA

NATURAL RESOURCES DEFENSE Case No. 1:05-cv-01207 LJO-EPG COUNCIL, et al., ORDER GRANTING MOTION TO Plaintiffs, STAY SIXTH CLAIM FOR RELIEF; AND DENYING WITHOUT vs. PREJUDICE MOTIONS TO DISMISS SIXTH CLAIM. DAVID BERNHARDT, Acting Secretary, U.S. Department of the Interior, et al.,

ECF NOS. 1323-24, 1381-82 Defendants.

SAN LUIS & DELTA MENDOTA WATER AUTHORITY, et al.,

Defendant-Intervenors.

ANDERSON-COTTONWOOD IRRIGATION DISTRICT, et al.,

Joined Parties.

Before the Court for decision in this long-standing, highly complex Endangered Species Act

(“ESA”) case are the following motions: two defense motions to dismiss the remaining aspects of the

only remaining claim (the sixth claim for relief) in this case on mootness grounds; Plaintiffs’ motion to

stay the sixth claim in light of newly-filed, related litigation; Federal Defendants’ related motion to

dismiss the seventh claim for relief as moot; and Plaintiffs’ request for entry of separate judgment under

Federal Rule of Civil Procedure 54(b) as to the second, fourth, and fifth claims for relief. The matters

were taken under submission on the papers pursuant to Local Rule 230(g). The Court has thoroughly

reviewed and considered the briefs and authorities cited therein in light of the entire record. For the WITHOUT PREJUDICE as MOOT. In the coming days, the Court plans to enter a separate order

requesting supplemental briefing in connection with Federal Defendants’ motion to dismiss the seventh

claim for relief. The Court also will endeavor to rule on Plaintiffs’ remaining request for entry of

separate judgment before the end of the month. If it cannot complete that last task, that remaining

motion will be handled by the jurist who will soon be assigned to this and related cases.

On March 12, 2018, Plaintiffs, a coalition of environmental interest groups led by the Natural

Resources Defense Council (“NRDC”), filed the currently operative Sixth Supplemental Complaint

(“6SC”), which includes numerous claims brought under the Administrative Procedure Act (“APA”), 5

U.S.C. § 701 et seq., and the Endangered Species Act (“ESA”), 16 U.S.C. § 1531 et seq., against the

U.S. Bureau of Reclamation (“Bureau” or “Reclamation”), the U.S. Fish and Wildlife Service (“FWS”

or “Service”), and various Joined Defendants and Defendant Intervenors. See generally ECF No. 1187.

Certain aspects of the sixth claim for relief arising under Section 9 of the ESA, 16 U.S.C. § 1538

(“Section 9”), remain unresolved. Generally, the sixth claim (“Section 9 Claim”) alleges that certain

holders of a type of long-term, priority water contract, known as the Sacramento River Settlement

Contracts (“SRS Contracts” or “SRS Contractors” when referring to the holders), and Reclamation

violated Section 9’s prohibition against taking listed species because they caused substantial

temperature-dependent mortality of Sacramento River winter-run Chinook salmon (“winter-run”) and

Central Valley spring-run Chinook salmon (“spring-run”) eggs and fry (young fish) in the Upper

Sacramento River in 2014 and 2015. 6SC at ¶¶ 201-205.

Section 9 of the ESA makes it unlawful for any person to “take,” i.e., to harm, kill or harass, any

listed endangered species of fish or wildlife within the United States, 16 U.S.C. §§ 1538(a)(1)(take

prohibition), 1532(12) (definition of “take”), unless an exemption from the take prohibition is obtained

pursuant to certain other ESA provisions, see id. §§ 1536(b)(4), 1536(o), 1539(a). The Section 9 Claim Contractors’ diversion of water pursuant to their priority water rights. Without belaboring the point or

delving into detail that is unnecessary to this order, it is safe to say that at the time this Court ruled on

the parties’ cross-motions for summary judgment concerning the Section 9 Claim, the SRS Contractors

did not hold any permit or other form of exemption from Section 9’s take prohibitions with respect to

their primary, priority diversions from the Sacramento River. See Nat. Res. Def. Council v. Zinke, 347 F.

Supp. 3d 465, 484 (E.D. Cal. 2018).

The Section 9 Claim against Reclamation focuses on Reclamation’s discretionary activities,

including actions Reclamation took in 2014 and 2015 to facilitate voluntary transfers between the SRS

Contractors and others, as one part of Reclamation’s overall role in the coordinated operation of the federal Central Valley Project (“CVP”) and State Water Project (“SWP”) (collectively, the “Project”).1

ESA Section 7(a)(2) imposes a procedural duty on Reclamation to consult with FWS or the National Marine Fisheries Service (“NMFS”), depending on the protected species at issue,2 to “insure that any

action authorized, funded, or carried out by such agency . . . is not likely to jeopardize the continued

existence of any endangered species or threatened species or result in the destruction or adverse

modification” of critical habitats of listed species. 16 U.S.C. § 1536(a)(2).

Reclamation has on numerous occasions engaged in consultation over the Project with both FWS

and NMFS. Formal consultation results in the issuance of a “biological opinion” (“BiOp”) by the

relevant wildlife agency (FWS or NMFS). See 16 U.S.C. § 1536(b). If the BiOp concludes that the

proposed action would jeopardize the species or destroy or adversely modify critical habitat, see id. §

1 Reclamation coordinates with California’s Department of Water Resources to operate the CVP and SWP. See San Luis & Delta-Mendota Water Auth. v. Jewell, 747 F.3d 581, 594, 597 (9th Cir. 2014).

2 Generally, FWS has jurisdiction over species of fish that either (1) spend the major portion of their life in fresh water, or (2) spend part of their lives in estuarine waters, if the remaining time is spent in fresh water. See Cal. State Grange v. Nat’l Marine Fisheries Serv., 620 F. Supp. 2d 1111, 1120 n.1 (E.D. Cal. 2008), as corrected (Oct. 31, 2008). NMFS is granted jurisdiction over fish species that (1) spend the major portion of their life in ocean water, or (2) spend part of their lives in estuarine waters, if the remaining portion is spent in ocean water. Id. NMFS exercises jurisdiction over the winter-run and prudent alternative[]” (“RPA”) that avoids jeopardy, destruction, or adverse modification. Id. §

1536(b)(3)(A). If a BiOp concludes that the proposed action (or the action implemented in conjunction with actions described in the RPA) will cause incidental taking3 of protected species, but that despite

this taking, the action will not jeopardize the species or threaten critical habitat, the wildlife agency

shall provide the Federal agency and the applicant concerned, if any with a written statement that—

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