In Re Patrick H. O'farrell, Barry A. Polisky and David H. Gelfand

853 F.2d 894, 7 U.S.P.Q. 2d (BNA) 1673, 1988 U.S. App. LEXIS 10951, 1988 WL 82157
CourtCourt of Appeals for the Federal Circuit
DecidedAugust 10, 1988
Docket87-1486
StatusPublished
Cited by140 cases

This text of 853 F.2d 894 (In Re Patrick H. O'farrell, Barry A. Polisky and David H. Gelfand) is published on Counsel Stack Legal Research, covering Court of Appeals for the Federal Circuit primary law. Counsel Stack provides free access to over 12 million legal documents including statutes, case law, regulations, and constitutions.

Bluebook
In Re Patrick H. O'farrell, Barry A. Polisky and David H. Gelfand, 853 F.2d 894, 7 U.S.P.Q. 2d (BNA) 1673, 1988 U.S. App. LEXIS 10951, 1988 WL 82157 (Fed. Cir. 1988).

Opinion

RICH, Circuit Judge.

This appeal is from the decision of the United States Patent and Trademark Office Board of Patent Appeals and Interferences (board) affirming the patent examiner’s final rejection of patent application Serial No. 180,424, entitled “Method and Hybrid Vector for Regulating Translation of Het-erologous DNA in Bacteria.” The application was rejected under 35 U.S.C. § 103 on the ground that the claimed invention would have been obvious at the time the invention was made in view of a published paper by two of the three coinventors, and a publication by Bahl, Marians & Wu, 1 Gene 81 (1976) (Bahl). We affirm.

The claimed invention is from the developing new field of genetic engineering. A broad claim on appeal reads:

Claim 1. A method for producing a predetermined protein in a stable form in a transformed host species of bacteria comprising, providing a cloning vector which includes at least a substantial portion of a gene which is indigenous to the host species of bacteria and is functionally transcribed and translated in that species, said substantial portion of said indigenous gene further including the regulatory DNA sequences for RNA synthesis and protein synthesis but lacking the normal gene termination signal, and linking a natural or synthetic heterologous gene encoding said predetermined protein to said indigenous gene portion at its distal end, said heterologous gene being in proper orientation and having codons arranged in the same reading frame as the codons of said indigenous gene portion so that readthrough can occur from said indigenous gene portion into said heterologous gene in the same reading frame, said heterologous gene portion further containing sufficient DNA sequences to result in expression of a fused protein having sufficient size so as to confer stability on said predetermined protein when said vector is used to transform said host species of bacteria.

Illustrative embodiments are defined in more specific claims. For example:

Claim 2. A method for producing a predetermined protein in a stable form in a transformed host species of bacteria, comprising, providing an E. coli plasmid having an operator, a promoter, a site for the initiation of translation, and at least a substantial portion of the beta-galactosi-dase gene of the E. coli lactose operon, said substantial portion of said beta-ga-lactosidase gene being under the control of said operator, promoter and site for initiation of translation, said substantial portion of said beta-galactosidase gene lacking the normal gene termination signal, and linking a heterologous gene encoding said predetermined protein to said beta-galactosidase gene portion at its distal end, said heterologous gene being in proper orientation and having codons arranged in the same reading frame as the codons of the said beta-galactosidase gene portion so that readthrough can occur from said beta-galactosidase gene portion into said heterologous gene in the same reading frame, said heterologous gene portion further containing sufficient DNA sequences to result in expression of a fused protein having sufficient size so as to confer stability on said predetermined protein when said vector is used to transform said host species of bacteria.
Claim 3. The method of Claim 2 wherein said E. coli plasmid comprises the plasmid designated pBGP120.

Although the terms in these claims would be familiar to those of ordinary skill in genetic engineering, they employ a bewildering vocabulary new to those who are not versed in molecular biology. An understanding of the science and technology on which these claims are based is essential before one can analyze and explain whether the claimed invention would have been obvious in light of the prior art.

I. Background 1

Proteins are biological molecules of enormous importance. Proteins include en *896 zymes that catalyze biochemical reactions, major structural materials of the animal body, and many hormones. Numerous patents and applications for patents in the field of biotechnology involve specific proteins or methods for making and using proteins. Many valuable proteins occur in nature only in minute quantities, or are difficult to purify from natural sources. Therefore, a goal of many biotechnology projects, including appellants’ claimed invention, is to devise methods to synthesize useful quantities of specific proteins by controlling the mechanism by which living cells make proteins.

The basic organization of all proteins is the same. Proteins are large polymeric molecules consisting of chains of smaller building blocks, called amino acids, that are linked together covalently. 2 The chemical bonds linking amino acids together are called peptide bonds, so proteins are also called polypeptides. 3 It is the exact sequence in which the amino acids are strung together in a polypeptide chain that determines the identity of a protein and its chemical characteristics. 4 Although there are only 20 amino acids, they are strung together in different orders to produce the hundreds of thousands of proteins found in nature.

To make a protein molecule, a cell needs information about the sequence in which the amino acids must be assembled. The cell uses a long polymeric molecule, DNA (deoxyriboneucleic acid), to store this information. The subunits of the DNA chain are called nucleotides. A nucleotide consists of a nitrogen-containing ring compound (called a base) linked to a 5-carbon sugar that has a phosphate group attached. 5 DNA is composed of only four nucleotides. They differ from each other in the base region of the molecule. The four bases of these subunits are adenine, guanine, cytosine, and thymine (abbreviated respectively as A, G, C and T). The sequence of these bases along the DNA molecule specifies which amino acids will be inserted in sequence into the polypeptide chain of a protein.

DNA molecules do not participate directly in the synthesis of proteins. DNA acts as a permanent “blueprint” of all of the *897 genetic information in the cell, and exists mainly in extremely long strands (called chromosomes) containing information coding for the sequences of many proteins, most of which are not being synthesized at any particular moment. The region of DNA on the chromosome that codes for the sequence of a single polypeptide is called a gene. 6 In order to express a gene (the process whereby the information in a gene is used to synthesize new protein), a copy of the gene is first made as a molecule of RNA (ribonucleic acid).

RNA is a molecule that closely resembles DNA.

Free access — add to your briefcase to read the full text and ask questions with AI

Related

Yeda Research and Development Co., Ltd. v. Abbott Gmbh & Co. Kg
99 F. Supp. 3d 5 (District of Columbia, 2015)
Par Pharmaceutical, Inc. v. Twi Pharmaceuticals, Inc.
773 F.3d 1186 (Federal Circuit, 2014)
Allergan, Inc. v. Apotex Inc.
754 F.3d 952 (Federal Circuit, 2014)
Hoffmann-La Roche Inc. v. Apotex Inc.
748 F.3d 1326 (Federal Circuit, 2014)
Warner Chilcott Co. v. Teva Pharmaceuticals USA, Inc.
37 F. Supp. 3d 731 (D. Delaware, 2014)
Bone Care International, LLC v. Pentech Pharmaceuticals, Inc.
862 F. Supp. 2d 790 (N.D. Illinois, 2012)
In Re Conrad Oliver Gardner
449 F. App'x 914 (Federal Circuit, 2011)
Stone Strong, LLC v. Del Zotto Products of Florida, Inc.
455 F. App'x 964 (Federal Circuit, 2011)
Unigene Laboratories, Inc. v. Apotex, Inc.
655 F.3d 1352 (Federal Circuit, 2011)
In Re Brimonidine Patent Litigation
643 F.3d 1366 (Federal Circuit, 2011)
Cimline, Inc. v. Crafco, Inc.
413 F. App'x 240 (Federal Circuit, 2011)
Semiconductor Energy Laboratory Co. v. Samsung Electronics Co.
711 F. Supp. 2d 913 (W.D. Wisconsin, 2010)
Perfect Web Technologies, Inc. v. InfoUSA, Inc.
587 F.3d 1324 (Federal Circuit, 2009)
Oatey Co. v. Ips Corp.
665 F. Supp. 2d 830 (N.D. Ohio, 2009)

Cite This Page — Counsel Stack

Bluebook (online)
853 F.2d 894, 7 U.S.P.Q. 2d (BNA) 1673, 1988 U.S. App. LEXIS 10951, 1988 WL 82157, Counsel Stack Legal Research, https://law.counselstack.com/opinion/in-re-patrick-h-ofarrell-barry-a-polisky-and-david-h-gelfand-cafc-1988.