Illumina Inc. v. BGI Genomics Co., Ltd.

District Court, N.D. California·Decided June 11, 2021·No. 3:20-cv-01465·Unknown

Opinion

ILLUMINA INC., et al., Case No. 20-cv-01465-WHO

Plaintiffs, ORDER GRANTING MOTION FOR v. LEAVE TO AMEND

BGI GENOMICS CO., LTD., et al., Re: Dkt. Nos. 341, 342, 360, 375, 384 Defendants.

Plaintiffs Illumina, Inc. and Illumina Cambridge Ltd. (collectively “Illumina”) move for leave to amend their infringement contentions to add a literal infringement theory that the CoolMPS product infringes claims 1, 7, and 17 of its ’025 patent. Defendants BGI Genomics Co., Ltd., BGI Americas Corp., MGI Tech Co., Ltd., MGI Americas, Inc., and Complete Genomics Inc. (collectively “BGI”) oppose the motion, arguing that Illumina did not diligently seek leave to amend and that amendment would unfairly prejudice BGI. For the reasons discussed below, I conclude that Illumina has good cause to amend, that it acted with reasonable diligence in seeking leave to amend, and that amendment would not unduly prejudice BGI. Accordingly, Illumina’s motion for leave to amend is GRANTED. On April 3, 2020, Illumina served BGI with its preliminary infringement contentions of BGI’s sequencers and associated reagent products using StandardMPS and CoolMPS technology (“Accused Products”). Dkt. No. 352 (“Mot.”) at 2, 13. Illumina’s preliminary infringement contentions accused BGI’s StandardMPS sequencing reagent of literally infringing claim 1 of Illumina’s U.S. Patent No. 10,480,025 (the “’025 Patent”). Mot. at 2. Claim 1 of the ’025 Patent states, “A nucleotide or nucleoside molecule having a ribose or deoxyribose attached via a 3' oxygen atom, and wherein said protecting group comprises an azido group that can be modified or removed to expose a 3' OH group.” Dkt. No. 1-3 at 51. Specifically, Illumina asserted that the StandardMPS product with a cleavable linker between the nucleotide and the label literally infringed claim 1. Dkt. No. 211-12 at 1. At the time, Illumina only accused BGI’s CoolMPS sequencing reagent of infringing claims 1, 7, and 17 under the doctrine of equivalents (“DOE”) theory because Illumina did not believe that the CoolMPS product contained cleavable linking structures.1 Mot. at 2–3; see Dkt. No. 211-12 at 1–5, 17, 31. Illumina asserted that the antibodies in CoolMPS are functionally equivalent to the claimed cleavable linkers. Dkt. No. 211-12 at 2. In support of its DOE theory, Illumina referenced an article by BGI employees titled, CoolMPS™: Advanced Massively Parallel Sequencing Using Antibodies Specific to Each Natural Nucleobase (Feb. 20, 2020) (the “CoolMPS Paper”). Dkt. No. 343-20. As discovery proceeded, Illumina, Inc. filed another case against a defendant in this case, MGI Tech Co., Ltd., and three other MGI entities, in the United Kingdom (the “UK case”) alleging infringement of its European patents, which involve similar subject matter to the Illumina patents here. Dkt. No. 341-6 (“Hopewell Decl.”) ¶¶ 3–4. Illumina’s UK outside counsel and in-house counsel were under a protective order that prohibited them from sharing evidence in the UK case with others, including Illumina’s US outside counsel. Hopewell Decl. ¶ 6. On June 3, 2020, in the UK case, BGI submitted a confidential Product and Process Description (“PPD”), a technical document which outlined each Accused Product and provided a description and diagram of the CoolMPS system’s chemical structures. Hopewell Decl. ¶ 4. The unredacted version of the PPD suggests that there were cleavable linking structures between CoolMPS antibodies and dyes. Dkt. No. 352-10 (“Mot., Ex. 18”) ¶ 5.4. On November 5, 2020, Illumina filed an outline of its arguments for the UK trial (“UK Trial Plan”). Dkt. No. 361-3 (“Ridgway Decl., Ex. B”). In the Trial Plan, Illumina asserted (1) a literal infringement theory where “the term ‘cleavable linker’ is not limited to covalent bonds and encompasses systems that use e.g. antibody binding”; and (2) a secondary theory of infringement where even if the term “cleavable linker” requires a covalent bond, CoolMPS infringes because it has a “cleavable element (the N3 containing group) within the covalently bonded structure” and “the N3 group would allow the linker to be cleaved using phosphine.” Ridgway Decl., Ex. B ¶¶ 129–30, 143–45. For its foreign cases, Illumina Cambridge Ltd. filed an application in a related action, under 28 U.S.C. § 1782, seeking information from BGI entities. See In re Application of Illumina Cambridge Ltd., No. 19-MC-80215-WHO (TSH) (N.D. Cal.). As part of that action, Illumina took a 30(b)(6) deposition of Dr. Chongjun Xu, the Senior Director of Research at Complete Genomics Inc., on July 21, 2020. See Dkt. Nos. 352-4, 360-4 (“Xu Depo. Tr.”). On March 5, 2021, Illumina’s UK outside counsel provided a redacted version of the PPD to Illumina’s in-house counsel, who forwarded it to Illumina’s US outside counsel. Hopewell Decl. ¶ 10. That same day, Illumina’s US outside counsel emailed BGI requesting that it produce an unredacted version of the PPD. Dkt. No. 352-2 at 7 (“Root Email, Mar. 5, 2021”). On March 16, BGI produced an unredacted version of the PPD. Dkt. No. 352-2 at 4–5 (“Fernands Email, Mar. 16, 2021”). The next day, during his deposition, Dr. Snezana Drmanac confirmed that the structures disclosed in the unredacted PPD were cleavable linking structures. Dkt. No. 352-6 (“Drmanac Depo. Tr.”) at 282:19–283:13; 286:11–287:1. On March 21, Illumina emailed BGI requesting additional documents about the linking structures and on March 24, Illumina informed BGI that it planned to move to amend its infringement contentions and requested a meet and confer if BGI opposed. Dkt. No. 352-2 at 4 (“Root Email, Mar. 21, 2021”); Dkt. No. 341-14 at 3–4 (“Root Email, Mar. 24, 2021”). The next day, on March 25, BGI rejected Illumina’s request for additional documents and asserted that the linking structures were irrelevant to any of Illumina’s discovery requests. Dkt. No. 352-2 at 2–3 (“Naravage Email, Mar. 25, 2021”). Fact discovery closed on March 26. On March 31, the parties met and conferred; BGI objected to amendment. Mot. at 5. On April 7, BGI indicated that it would oppose the motion based on lack of diligence and undue prejudice. Dkt. No. 341-11 at 1. After continued back-and-forth, on April 13, 2021, Illumina filed this motion for leave to amend. “Patent Local Rule 3 requires patent disclosures early in a case and streamlines discovery by replacing the series of interrogatories that parties would likely have propounded without it.” ASUS Computer Int'l v. Round Rock Research, LLC, No. 12-CV-02099-JST, 2014 WL 1463609, at *1 (N.D. Cal. Apr. 11, 2014) (internal quotation marks and alterations omitted). The disclosures required under Patent L.R. 3 are designed “to require parties to crystallize their theories of the case early in the litigation and to adhere to those theories once they have been disclosed.” Nova Measuring Instruments Ltd. v. Nanometrics, Inc., 417 F. Supp. 2d 1121, 1123 (N.D. Cal. 2006). “They are also designed to provide structure to discovery and enable the parties to move efficiently toward claim construction and the eventual resolution of their dispute.” Golden Bridge Tech. Inc. v. Apple, Inc., No. 12-CV-04882-PSG, 2014 WL 1928977, at *3 (N.D. Cal. May 14, 2014) (internal quotation marks omitted); see also O2 Micro Int'l Ltd. v. Monolithic Power Sys., Inc., 467 F.3d 1355, 1365-66 (Fed. Cir. 2006) (“The local patent rules in the Northern District of California [require] both the plaintiff and the defendant in patent cases to provide early notice of their infringement and invalidity contentions, and to proceed with diligence in amending those contentions when new information comes to light in the course of discovery. The rules thus seek to balance the right to develop new information in discovery with the need for certainty as

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